Helper function which collapses a list of XStringSet into a single XStringSet.

collapse_XStringSetList(x)

Arguments

x

XStringSet

Author

Kristian K Ullrich

Examples

##load example sequence data
data("mousePRDM9", package="repeatR")
myRepPattern<-"PY"
myRepLength<-84
mousePRDM9.random<-sample(mousePRDM9, 20)
mousePRDM9.random.split<-repeatR::splitRepByPattern(mousePRDM9.random,
    myRepPattern, myRepLength)
repeatR::collapse_XStringSetList(mousePRDM9.random.split$cds)
#> DNAStringSet object of length 215:
#>       width seq                                             names               
#>   [1]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG KF462503.1_cds_AH...
#>   [2]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG KF462503.1_cds_AH...
#>   [3]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG KF462503.1_cds_AH...
#>   [4]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG KF462503.1_cds_AH...
#>   [5]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG KF462503.1_cds_AH...
#>   ...   ... ...
#> [211]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG AB843918.1_Mmc_HI...
#> [212]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG AB843918.1_Mmc_HI...
#> [213]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG AB843918.1_Mmc_HI...
#> [214]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACACACAGGGGAGAAG AB843918.1_Mmc_HI...
#> [215]    84 CCCTATGTTTGCAGGGAGTGTG...GAGGACACATACAAGAGAGAAG AB843918.1_Mmc_HI...