# Scripts for the Publication:

## Get masking regions for individual samples and natural populations

_used software:

## SNP and INDEL calling

_used software:

## K80 distance calculation

### Get population specific SNPs

_used software:

### Calculate population specific Consensus sequence

_used software:

### Calculate K80 distance between populations

## Dxy distance calculation

### Calculate Dxy distance between populations

_used software:

### Calculate Dxy distance between individuals and populations

_used software: